SparkGraphx如何实现图中极大团挖掘
今天就跟大家聊聊有关Spark Graphx如何实现图中极大团挖掘，可能很多人都不太了解，为了让大家更加了解，小编给大家总结了以下内容，希望大家根据这篇文章可以有所收获。
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spark graphx并未提供极大团挖掘算法
当下的极大团算法都是串行化的算法,基于Bron–Kerbosch算法
####思路:####
spark graphx提供了连通图的算法,连通图和极大团都是无向图中的概念,极大团为连通图的子集
利用spark graphx 找出连通图,在从各个连通图中,利用串行化的极大团算法,找出极大团 (伪并行化)
对于关联性较强的图,找出来的连通图非常大,这时串行化的极大团算法,仍然会耗时很久,这里利用剪枝的思想减少样本数据量,但是对于大图,优化空间有限
期待真正的并行化的极大团算法
####配置文件:####
graph_data_path=hdfs://localhost/graph_data out_path=hdfs://localhost/clique ck_path=hdfs://localhost/checkpoint numIter=50 剪枝次数 count=3 极大团顶点数大小 algorithm=2 极大团算法,1:个人实现 2:jgrapht percent=90 剪枝后的顶点数,占前一次的百分比,如果剪完后,还剩下90%的数据,那么剪枝效率已然不高 spark.master=local spark.app.name=graph spark.serializer=org.apache.spark.serializer.KryoSerializer spark.yarn.executor.memoryOverhead=20480 spark.yarn.driver.memoryOverhead=20480 spark.driver.extraJavaOptions=-XX:+UseG1GC -XX:+UseCompressedOops -XX:+DisableExplicitGC spark.executor.extraJavaOptions=-XX:+UseG1GC -XX:+UseCompressedOops -XX:+DisableExplicitGC spark.driver.maxResultSize=10g spark.default.parallelism=60
####样本数据:####
{"src":"0","dst":"1"} {"src":"0","dst":"2"} {"src":"0","dst":"3"} {"src":"1","dst":"0"} {"src":"2","dst":"1"} {"src":"3","dst":"5"} {"src":"4","dst":"6"} {"src":"5","dst":"4"} {"src":"6","dst":"5"} {"src":"3","dst":"2"} {"src":"2","dst":"3"} {"src":"6","dst":"4"} {"src":"3","dst":"4"} {"src":"4","dst":"3"} {"src":"2","dst":"6"} {"src":"6","dst":"2"} {"src":"6","dst":"7"} {"src":"7","dst":"6"}
####样本图:####
####输出:####
0,1,2 0,2,3 3,4,5 4,5,6
####代码实现:####
import java.util import java.util.Properties
import org.apache.spark.broadcast.Broadcast import org.apache.spark.graphx.{Edge, Graph} import org.apache.spark.rdd.RDD import org.apache.spark.sql.{Row, SQLContext} import org.apache.spark.storage.StorageLevel import org.apache.spark.{SparkConf, SparkContext} import org.jgrapht.alg.BronKerboschCliqueFinder import org.jgrapht.graph.{DefaultEdge, SimpleGraph} import scala.collection.JavaConverters._ import scala.collection.mutable object ApplicationTitan { def main(args: Array[String]) { val prop = new Properties() prop.load(getClass.getResourceAsStream("/config.properties")) val graph_data_path = prop.getProperty("graph_data_path") val out_path = prop.getProperty("out_path") val ck_path = prop.getProperty("ck_path") val count = Integer.parseInt(prop.getProperty("count")) val numIter = Integer.parseInt(prop.getProperty("numIter")) val algorithm = Integer.parseInt(prop.getProperty("algorithm")) val percent = Integer.parseInt(prop.getProperty("percent")) val conf = new SparkConf() try { Runtime.getRuntime.exec("hdfs dfs -rm -r " + out_path) // Runtime.getRuntime.exec("cmd.exe /C rd /s /q " + out_path) } catch { case ex: Exception => ex.printStackTrace(System.out) } prop.stringPropertyNames().asScala.foreach(s => { if (s.startsWith("spark")) { conf.set(s, prop.getProperty(s)) } }) conf.registerKryoClasses(Array(getClass)) val sc = new SparkContext(conf) sc.setLogLevel("ERROR") sc.setCheckpointDir(ck_path) val sqlc = new SQLContext(sc) try { val e_df = sqlc.read // .json(graph_data_path) .parquet(graph_data_path) var e_rdd = e_df .mapPartitions(it => { it.map({ case Row(dst: String, src: String) => val src_long = src.toLong val dst_long = dst.toLong if (src_long < dst_long) (src_long, dst_long) else (dst_long, src_long) }) }).distinct() e_rdd.persist(StorageLevel.MEMORY_AND_DISK_SER) var bc: Broadcast[Set[Long]] = null var iter = 0 var bc_size = 0 //剪枝 while (iter <= numIter) { val temp = e_rdd .flatMap(x => List((x._1, 1), (x._2, 1))) .reduceByKey((x, y) => x + y) .filter(x => x._2 >= count - 1) .mapPartitions(it => it.map(x => x._1)) val bc_value = temp.collect().toSet bc = sc.broadcast(bc_value) e_rdd = e_rdd.filter(x => bc.value.contains(x._1) && bc.value.contains(x._2)) e_rdd.persist(StorageLevel.MEMORY_AND_DISK_SER) iter += 1 if (bc_size != 0 && bc_value.size >= bc_size * percent / 100) { println("total iter : "+ iter) iter = Int.MaxValue } bc_size = bc_value.size } // 构造图 val edge: RDD[Edge[Long]] = e_rdd.mapPartitions(it => it.map(x => Edge(x._1, x._2))) val graph = Graph.fromEdges(edge, 0, StorageLevel.MEMORY_AND_DISK_SER, StorageLevel.MEMORY_AND_DISK_SER) //连通图 val cc = graph.connectedComponents().vertices cc.persist(StorageLevel.MEMORY_AND_DISK_SER) cc.join(e_rdd) .mapPartitions(it => it.map(x => ((math.random * 10).toInt.toString.concat(x._2._1.toString), (x._1, x._2._2)))) .aggregateByKey(List[(Long, Long)]())((list, v) => list :+ v, (list1, list2) => list1 ::: list2) .mapPartitions(it => it.map(x => (x._1.substring(1), x._2))) .aggregateByKey(List[(Long, Long)]())((list1, list2) => list1 ::: list2, (list3, list4) => list3 ::: list4) .filter(x => x._2.size >= count - 1) .flatMap(x => { if (algorithm == 1) find(x, count) else find2(x, count) }) .mapPartitions(it => { it.map({ case set => var temp = "" set.asScala.foreach(x => temp += x + ",") temp.substring(0, temp.length - 1) case _ => }) }) // .coalesce(1) .saveAsTextFile(out_path) } catch { case ex: Exception => ex.printStackTrace(System.out) } sc.stop() } //自己实现的极大团算法 def find(x: (String, List[(Long, Long)]), count: Int): mutable.Set[util.Set[String]] = { println(x._1 + "|s|" + x._2.size) println("BKCliqueFinder---" + x._1 + "---" + System.currentTimeMillis()) val neighbors = new util.HashMap[String, util.Set[String]] val finder = new CliqueFinder(neighbors, count) x._2.foreach(r => { val v1 = r._1.toString val v2 = r._2.toString if (neighbors.containsKey(v1)) { neighbors.get(v1).add(v2) } else { val temp = new util.HashSet[String]() temp.add(v2) neighbors.put(v1, temp) } if (neighbors.containsKey(v2)) { neighbors.get(v2).add(v1) } else { val temp = new util.HashSet[String]() temp.add(v1) neighbors.put(v2, temp) } }) println("BKCliqueFinder---" + x._1 + "---" + System.currentTimeMillis()) finder.findMaxCliques().asScala } //jgrapht 中的极大团算法 def find2(x: (String, List[(Long, Long)]), count: Int): Set[util.Set[String]] = { println(x._1 + "|s|" + x._2.size) println("BKCliqueFinder---" + x._1 + "---" + System.currentTimeMillis()) val to_clique = new SimpleGraph[String, DefaultEdge](classOf[DefaultEdge]) x._2.foreach(r => { val v1 = r._1.toString val v2 = r._2.toString to_clique.addVertex(v1) to_clique.addVertex(v2) to_clique.addEdge(v1, v2) }) val finder = new BronKerboschCliqueFinder(to_clique) val list = finder.getAllMaximalCliques.asScala var result = Set[util.Set[String]]() list.foreach(x => { if (x.size() >= count) result = result + x }) println("BKCliqueFinder---" + x._1 + "---" + System.currentTimeMillis()) result } }//自己实现的极大团算法
import java.util.*; /** * [@author](https://my.oschina.net/arthor) mopspecial@gmail.com * [@date](https://my.oschina.net/u/2504391) 2017/7/31 */ public class CliqueFinder { private Map> neighbors; private Set nodes; private Set> maxCliques = new HashSet<>(); private Integer minSize; public CliqueFinder(Map> neighbors, Integer minSize) { this.neighbors = neighbors; this.nodes = neighbors.keySet(); this.minSize = minSize; } private void bk3(Set clique, List candidates, List excluded) { if (candidates.isEmpty() && excluded.isEmpty()) { if (!clique.isEmpty() && clique.size() >= minSize) { maxCliques.add(clique); } return; } for (String s : degeneracy_order(candidates)) { List new_candidates = new ArrayList<>(candidates); new_candidates.retainAll(neighbors.get(s)); List new_excluded = new ArrayList<>(excluded); new_excluded.retainAll(neighbors.get(s)); Set nextClique = new HashSet<>(clique); nextClique.add(s); bk2(nextClique, new_candidates, new_excluded); candidates.remove(s); excluded.add(s); } } private void bk2(Set clique, List candidates, List excluded) { if (candidates.isEmpty() && excluded.isEmpty()) { if (!clique.isEmpty() && clique.size() >= minSize) { maxCliques.add(clique); } return; } String pivot = pick_random(candidates); if (pivot == null) { pivot = pick_random(excluded); } List tempc = new ArrayList<>(candidates); tempc.removeAll(neighbors.get(pivot)); for (String s : tempc) { List new_candidates = new ArrayList<>(candidates); new_candidates.retainAll(neighbors.get(s)); List new_excluded = new ArrayList<>(excluded); new_excluded.retainAll(neighbors.get(s)); Set nextClique = new HashSet<>(clique); nextClique.add(s); bk2(nextClique, new_candidates, new_excluded); candidates.remove(s); excluded.add(s); } } private List degeneracy_order(List innerNodes) { List result = new ArrayList<>(); Map deg = new HashMap<>(); for (String node : innerNodes) { deg.put(node, neighbors.get(node).size()); } while (!deg.isEmpty()) { Integer min = Collections.min(deg.values()); String minKey = null; for (String key : deg.keySet()) { if (deg.get(key).equals(min)) { minKey = key; break; } } result.add(minKey); deg.remove(minKey); for (String k : neighbors.get(minKey)) { if (deg.containsKey(k)) { deg.put(k, deg.get(k) - 1); } } } return result; } private String pick_random(List random) { if (random != null && !random.isEmpty()) { return random.get(0); } else { return null; } } public Set> findMaxCliques() { this.bk3(new HashSet<>(), new ArrayList<>(nodes), new ArrayList<>()); return maxCliques; } public static void main(String[] args) { Map> neighbors = new HashMap<>(); neighbors.put("0", new HashSet<>(Arrays.asList("1", "2", "3"))); neighbors.put("1", new HashSet<>(Arrays.asList("0", "2"))); neighbors.put("2", new HashSet<>(Arrays.asList("0", "1", "3", "6"))); neighbors.put("3", new HashSet<>(Arrays.asList("0", "2", "4", "5"))); neighbors.put("4", new HashSet<>(Arrays.asList("3", "5", "6"))); neighbors.put("5", new HashSet<>(Arrays.asList("3", "4", "6"))); neighbors.put("6", new HashSet<>(Arrays.asList("2", "4", "5"))); neighbors.put("7", new HashSet<>(Arrays.asList("6"))); CliqueFinder finder = new CliqueFinder(neighbors, 3); finder.bk3(new HashSet<>(), new ArrayList<>(neighbors.keySet()), new ArrayList<>()); System.out.println(finder.maxCliques); } } 看完上述内容，你们对Spark Graphx如何实现图中极大团挖掘有进一步的了解吗？如果还想了解更多知识或者相关内容，请关注创新互联行业资讯频道，感谢大家的支持。
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